DEMO_febio_0073_deformable_cylinders_contact_01
Below is a demonstration for:
- Building geometry for a slab with hexahedral elements, and a triangulated sphere.
- Defining the boundary conditions
- Coding the febio structure
- Running the model
- Importing and visualizing the displacement results
Contents
Keywords
- febio_spec version 4.0
- febio, FEBio
- indentation
- contact, sliding, sticky, friction
- rigid body constraints
- hexahedral elements, hex8
- triangular elements, tri3
- slab, block, rectangular
- sphere
- static, solid
- hyperelastic, Ogden
- displacement logfile
- stress logfile
clear; close all; clc;
Plot settings
fontSize=15; faceAlpha1=0.8; faceAlpha2=0.3; markerSize=40; markerSize2=20; lineWidth=3;
Control parameters
% Path names defaultFolder = fileparts(fileparts(mfilename('fullpath'))); savePath=fullfile(defaultFolder,'data','temp'); % Defining file names febioFebFileNamePart='tempModel'; febioFebFileName=fullfile(savePath,[febioFebFileNamePart,'.feb']); %FEB file name febioLogFileName=[febioFebFileNamePart,'.txt']; %FEBio log file name febioLogFileName_disp=[febioFebFileNamePart,'_disp_out.txt']; %Log file name for exporting displacement febioLogFileName_force=[febioFebFileNamePart,'_force_out.txt']; %Log file name for exporting force febioLogFileName_stress=[febioFebFileNamePart,'_stress_out.txt']; %Log file name for exporting stress %Geometry parameters cylRadius1=0.5; cylRadius2=1; cylLength=1; pointSpacing1=(cylRadius1*2*pi)/10*[1 1]; pointSpacing2=(cylRadius1*2*pi)/10*[1 1]; appliedForce=-0.0025; %Material parameter set E_youngs1=0.1; %Material Young's modulus nu1=0.35; %Material Poisson's ratio E_youngs2=0.1; %Material Young's modulus nu2=0.35; %Material Poisson's ratio materialDensity=1e-9; % FEA control settings numTimeSteps=25; %Number of time steps desired max_refs=25; %Max reforms max_ups=0; %Set to zero to use full-Newton iterations opt_iter=10; %Optimum number of iterations max_retries=5; %Maximum number of retires dtmin=(1/numTimeSteps)/100; %Minimum time step size dtmax=1/numTimeSteps; %Maximum time step size symmetric_stiffness=0; runMode='external';% 'internal' or 'external' %Contact parameters contactPenalty=10; laugon=0; minaug=1; maxaug=10; fric_coeff=0.01;
Creating model geometry and mesh
[meshOutput1]=hexMeshCylinder(cylRadius1,cylLength,pointSpacing1); E1=meshOutput1.elements; V1=meshOutput1.nodes; F1=meshOutput1.faces; Fb1=meshOutput1.facesBoundary; Cb1=meshOutput1.boundaryMarker; [meshOutput2]=hexMeshCylinder(cylRadius2,cylLength,pointSpacing2); E2=meshOutput2.elements; V2=meshOutput2.nodes; F2=meshOutput2.faces; Fb2=meshOutput2.facesBoundary; Cb2=meshOutput2.boundaryMarker; R=euler2DCM([0.5*pi 0 0]); V1=V1*R; V1(:,3)=V1(:,3)+cylRadius1; V2=V2*R; V2(:,3)=V2(:,3)-cylRadius2;
Join node sets
V=[V1;V2]; %Join nodes E2=E2+size(V1,1); %Shift indices for second set F2=F2+size(V1,1); %Shift indices for second set Fb2=Fb2+size(V1,1); %Shift indices for second set Fb=[Fb1;Fb2]; Cb=[Cb1;Cb2+1+max(Cb1(:))]; Nb1=patchNormal(Fb1,V); Nb2=patchNormal(Fb2,V); F=[F1;F2]; E=[E1;E2]; [F,V,~,indFix]=mergeVertices(F,V); E=indFix(E); E1=indFix(E1); E2=indFix(E2); Fb1=indFix(Fb1); Fb2=indFix(Fb2); Fb=indFix(Fb);
Visualization
cFigure; hold on; gpatch(Fb1,V,Cb1,'k',faceAlpha1); patchNormPlot(Fb1,V); gpatch(Fb2,V,Cb2,'k',faceAlpha1); patchNormPlot(Fb2,V); axisGeom(gca,fontSize); camlight headlight; colormap(gjet(250)); icolorbar; gdrawnow;
Define contact surfaces
nz=[0 0 1]; logicDown1=dot(Nb1,nz(ones(size(Nb1,1),1),:),2)<0; logicUp2=dot(Nb2,nz(ones(size(Nb2,1),1),:),2)>0; F_contact_primary=Fb2(Cb2==0 & logicUp2,:) ; F_contact_secondary=Fb1(Cb1==0 & logicDown1,:); % Plotting surface models cFigure; hold on; title('Contact sets and normal directions','FontSize',fontSize); gpatch(Fb,V,'kw','none',faceAlpha2); hl(1)=gpatch(F_contact_secondary,V,'g','k',1); patchNormPlot(F_contact_secondary,V); hl(2)=gpatch(F_contact_primary,V,'b','k',1); patchNormPlot(F_contact_primary,V); legend(hl,{'Secondary','Primary'}); axisGeom(gca,fontSize); camlight headlight; drawnow;
Define boundary conditions
VFb1=patchCentre(Fb1,V);
VFb2=patchCentre(Fb2,V);
%Supported nodes
logicPrescribe1=VFb1(:,3)>=cylRadius1 & Cb1==0;
logicSupport2=VFb2(:,3)<=-cylRadius2 & Cb2==0;
bcPrescribeList=unique(Fb1(logicPrescribe1,:));
bcSupportList=unique(Fb2(logicSupport2,:));
Visualize BC's
hf=cFigure; title('Boundary conditions model','FontSize',fontSize); xlabel('X','FontSize',fontSize); ylabel('Y','FontSize',fontSize); zlabel('Z','FontSize',fontSize); hold on; gpatch(Fb,V,Cb,'none',faceAlpha2); hl2(1)=plotV(V(bcSupportList,:),'k.','MarkerSize',markerSize); hl2(2)=plotV(V(bcPrescribeList,:),'r.','MarkerSize',markerSize); legend(hl2,{'BC support','BC prescribe'}); axisGeom(gca,fontSize); camlight headlight; drawnow;
Defining the FEBio input structure
See also febioStructTemplate and febioStruct2xml and the FEBio user manual.
%Get a template with default settings [febio_spec]=febioStructTemplate; %febio_spec version febio_spec.ATTR.version='4.0'; %Module section febio_spec.Module.ATTR.type='solid'; %Control section febio_spec.Control.analysis='STATIC'; febio_spec.Control.time_steps=numTimeSteps; febio_spec.Control.step_size=1/numTimeSteps; febio_spec.Control.solver.max_refs=max_refs; febio_spec.Control.solver.qn_method.max_ups=max_ups; febio_spec.Control.solver.symmetric_stiffness=symmetric_stiffness; febio_spec.Control.time_stepper.dtmin=dtmin; febio_spec.Control.time_stepper.dtmax=dtmax; febio_spec.Control.time_stepper.max_retries=max_retries; febio_spec.Control.time_stepper.opt_iter=opt_iter; %Material section materialName1='Material1'; febio_spec.Material.material{1}.ATTR.name=materialName1; febio_spec.Material.material{1}.ATTR.type='neo-Hookean'; febio_spec.Material.material{1}.ATTR.id=1; febio_spec.Material.material{1}.E=E_youngs1; febio_spec.Material.material{1}.v=nu1; febio_spec.Material.material{1}.density=materialDensity; materialName2='Material2'; febio_spec.Material.material{2}.ATTR.name=materialName2; febio_spec.Material.material{2}.ATTR.type='neo-Hookean'; febio_spec.Material.material{2}.ATTR.id=2; febio_spec.Material.material{2}.E=E_youngs2; febio_spec.Material.material{2}.v=nu2; febio_spec.Material.material{2}.density=materialDensity; %Mesh section % -> Nodes febio_spec.Mesh.Nodes{1}.ATTR.name='nodeSet_all'; %The node set name febio_spec.Mesh.Nodes{1}.node.ATTR.id=(1:size(V,1))'; %The node id's febio_spec.Mesh.Nodes{1}.node.VAL=V; %The nodel coordinates % -> Elements partName1='Part1'; febio_spec.Mesh.Elements{1}.ATTR.name=partName1; %Name of this part febio_spec.Mesh.Elements{1}.ATTR.type='hex8'; %Element type febio_spec.Mesh.Elements{1}.elem.ATTR.id=(1:1:size(E1,1))'; %Element id's febio_spec.Mesh.Elements{1}.elem.VAL=E1; %The element matrix partName2='Part2'; febio_spec.Mesh.Elements{2}.ATTR.name=partName2; %Name of this part febio_spec.Mesh.Elements{2}.ATTR.type='hex8'; %Element type febio_spec.Mesh.Elements{2}.elem.ATTR.id=size(E1,1)+(1:1:size(E2,1))'; %Element id's febio_spec.Mesh.Elements{2}.elem.VAL=E2; %The element matrix % -> NodeSets nodeSetName1='bcSupportList'; febio_spec.Mesh.NodeSet{1}.ATTR.name=nodeSetName1; febio_spec.Mesh.NodeSet{1}.VAL=mrow(bcSupportList); nodeSetName2='bcPrescribeList'; febio_spec.Mesh.NodeSet{2}.ATTR.name=nodeSetName2; febio_spec.Mesh.NodeSet{2}.VAL=mrow(bcPrescribeList); %MeshDomains section febio_spec.MeshDomains.SolidDomain{1}.ATTR.name=partName1; febio_spec.MeshDomains.SolidDomain{1}.ATTR.mat=materialName1; febio_spec.MeshDomains.SolidDomain{2}.ATTR.name=partName2; febio_spec.MeshDomains.SolidDomain{2}.ATTR.mat=materialName2; % -> Surfaces surfaceName1='contactSurface1'; febio_spec.Mesh.Surface{1}.ATTR.name=surfaceName1; febio_spec.Mesh.Surface{1}.quad4.ATTR.id=(1:1:size(F_contact_secondary,1))'; febio_spec.Mesh.Surface{1}.quad4.VAL=F_contact_secondary; surfaceName2='contactSurface2'; febio_spec.Mesh.Surface{2}.ATTR.name=surfaceName2; febio_spec.Mesh.Surface{2}.quad4.ATTR.id=(1:1:size(F_contact_primary,1))'; febio_spec.Mesh.Surface{2}.quad4.VAL=F_contact_primary; % -> Surface pairs contactPairName='Contact1'; febio_spec.Mesh.SurfacePair{1}.ATTR.name=contactPairName; febio_spec.Mesh.SurfacePair{1}.primary=surfaceName2; febio_spec.Mesh.SurfacePair{1}.secondary=surfaceName1; %Boundary condition section % -> Fix boundary conditions febio_spec.Boundary.bc{1}.ATTR.name='zero_displacement_xyz'; febio_spec.Boundary.bc{1}.ATTR.type='zero displacement'; febio_spec.Boundary.bc{1}.ATTR.node_set=nodeSetName1; febio_spec.Boundary.bc{1}.x_dof=1; febio_spec.Boundary.bc{1}.y_dof=1; febio_spec.Boundary.bc{1}.z_dof=1; %Boundary condition section % -> Fix boundary conditions febio_spec.Boundary.bc{2}.ATTR.name='zero_displacement_xy'; febio_spec.Boundary.bc{2}.ATTR.type='zero displacement'; febio_spec.Boundary.bc{2}.ATTR.node_set=nodeSetName2; febio_spec.Boundary.bc{2}.x_dof=1; febio_spec.Boundary.bc{2}.y_dof=1; febio_spec.Boundary.bc{2}.z_dof=0; %Loads section % -> Prescribed nodal forces febio_spec.Loads.nodal_load{1}.ATTR.name='PrescribedForceZ'; febio_spec.Loads.nodal_load{1}.ATTR.type='nodal_load'; febio_spec.Loads.nodal_load{1}.ATTR.node_set=nodeSetName2; febio_spec.Loads.nodal_load{1}.dof='z'; febio_spec.Loads.nodal_load{1}.scale.ATTR.lc=1; febio_spec.Loads.nodal_load{1}.scale.VAL=appliedForce/numel(bcPrescribeList); %Contact section febio_spec.Contact.contact{1}.ATTR.type='sliding-elastic'; febio_spec.Contact.contact{1}.ATTR.surface_pair=contactPairName; febio_spec.Contact.contact{1}.two_pass=1; febio_spec.Contact.contact{1}.laugon=laugon; febio_spec.Contact.contact{1}.tolerance=0.2; febio_spec.Contact.contact{1}.gaptol=0; febio_spec.Contact.contact{1}.minaug=minaug; febio_spec.Contact.contact{1}.maxaug=maxaug; febio_spec.Contact.contact{1}.search_tol=0.01; febio_spec.Contact.contact{1}.search_radius=0.01*sqrt(sum((max(V,[],1)-min(V,[],1)).^2,2)); febio_spec.Contact.contact{1}.symmetric_stiffness=0; febio_spec.Contact.contact{1}.auto_penalty=1; febio_spec.Contact.contact{1}.penalty=contactPenalty; febio_spec.Contact.contact{1}.fric_coeff=fric_coeff; %LoadData section % -> load_controller febio_spec.LoadData.load_controller{1}.ATTR.id=1; febio_spec.LoadData.load_controller{1}.ATTR.type='loadcurve'; febio_spec.LoadData.load_controller{1}.interpolate='LINEAR'; febio_spec.LoadData.load_controller{1}.points.point.VAL=[0 0; 1 1]; %LoadData section % -> load_controller febio_spec.LoadData.load_controller{1}.ATTR.name='LC_1'; febio_spec.LoadData.load_controller{1}.ATTR.id=1; febio_spec.LoadData.load_controller{1}.ATTR.type='loadcurve'; febio_spec.LoadData.load_controller{1}.interpolate='LINEAR'; %febio_spec.LoadData.load_controller{1}.extend='CONSTANT'; febio_spec.LoadData.load_controller{1}.points.pt.VAL=[0 0; 1 1]; %Output section % -> log file febio_spec.Output.logfile.ATTR.file=febioLogFileName; febio_spec.Output.logfile.node_data{1}.ATTR.file=febioLogFileName_disp; febio_spec.Output.logfile.node_data{1}.ATTR.data='ux;uy;uz'; febio_spec.Output.logfile.node_data{1}.ATTR.delim=','; febio_spec.Output.logfile.node_data{2}.ATTR.file=febioLogFileName_force; febio_spec.Output.logfile.node_data{2}.ATTR.data='Rx;Ry;Rz'; febio_spec.Output.logfile.node_data{2}.ATTR.delim=','; febio_spec.Output.logfile.element_data{1}.ATTR.file=febioLogFileName_stress; febio_spec.Output.logfile.element_data{1}.ATTR.data='s3'; febio_spec.Output.logfile.element_data{1}.ATTR.delim=','; % Plotfile section febio_spec.Output.plotfile.compression=0;
Quick viewing of the FEBio input file structure
The febView function can be used to view the xml structure in a MATLAB figure window.
febView(febio_spec); %Viewing the febio file
Exporting the FEBio input file
Exporting the febio_spec structure to an FEBio input file is done using the febioStruct2xml function.
febioStruct2xml(febio_spec,febioFebFileName); %Exporting to file and domNode
Running the FEBio analysis
To run the analysis defined by the created FEBio input file the runMonitorFEBio function is used. The input for this function is a structure defining job settings e.g. the FEBio input file name. The optional output runFlag informs the user if the analysis was run succesfully.
febioAnalysis.run_filename=febioFebFileName; %The input file name febioAnalysis.run_logname=febioLogFileName; %The name for the log file febioAnalysis.disp_on=1; %Display information on the command window febioAnalysis.runMode='internal';%'internal'; [runFlag]=runMonitorFEBio(febioAnalysis);%START FEBio NOW!!!!!!!!
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
--------> RUNNING/MONITORING FEBIO JOB <-------- 29-May-2023 10:58:47
FEBio path: /home/kevin/FEBioStudio/bin/febio4
# Attempt removal of existing log files 29-May-2023 10:58:47
* Removal succesful 29-May-2023 10:58:47
# Attempt removal of existing .xplt files 29-May-2023 10:58:47
* Removal succesful 29-May-2023 10:58:47
# Starting FEBio... 29-May-2023 10:58:47
Max. total analysis time is: Inf s
===========================================================================
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F I N I T E E L E M E N T S F O R B I O M E C H A N I C S
version 4.1.0
FEBio is a registered trademark.
copyright (c) 2006-2023 - All rights reserved
===========================================================================
Default linear solver: pardiso
Success loading plugin libFEBioChem.so (version 1.0.0)
Success loading plugin libFEBioHeat.so (version 2.0.0)
Reading file /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel.feb ...SUCCESS!
Data Record #1
===========================================================================
Step = 0
Time = 0
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 0
Time = 0
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 0
Time = 0
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(0%) tempModel.feb - FEBio 4.1.0 ]0;(0%) tempModel.feb - FEBio 4.1.0
*************************************************************************
* Selecting linear solver pardiso *
*************************************************************************
===== beginning time step 1 : 0.04 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.04
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.477083e-14 0.000000e+00
energy 4.105233e-07 3.492419e-10 4.105233e-09
displacement 4.177693e-03 4.177693e-03 4.177693e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.04
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.153301e-24 0.000000e+00
energy 4.105233e-07 4.651335e-18 4.105233e-09
displacement 4.177693e-03 3.243597e-09 4.170495e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.04
Data Record #1
===========================================================================
Step = 1
Time = 0.04
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 1
Time = 0.04
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 1
Time = 0.04
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(4%) tempModel.feb - FEBio 4.1.0
===== beginning time step 2 : 0.08 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.08
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.486674e-14 0.000000e+00
energy 4.098306e-07 3.467719e-10 4.098306e-09
displacement 4.163320e-03 4.163320e-03 4.163320e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.08
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.144154e-24 0.000000e+00
energy 4.098306e-07 4.572049e-18 4.098306e-09
displacement 4.163320e-03 3.200008e-09 4.156184e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.08
Data Record #1
===========================================================================
Step = 2
Time = 0.08
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 2
Time = 0.08
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 2
Time = 0.08
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(8%) tempModel.feb - FEBio 4.1.0
===== beginning time step 3 : 0.12 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.12
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.496400e-14 0.000000e+00
energy 4.091428e-07 3.442957e-10 4.091428e-09
displacement 4.149072e-03 4.149072e-03 4.149072e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.12
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.134407e-24 0.000000e+00
energy 4.091428e-07 4.492109e-18 4.091428e-09
displacement 4.149072e-03 3.156636e-09 4.141999e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.12
Data Record #1
===========================================================================
Step = 3
Time = 0.12
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 3
Time = 0.12
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 3
Time = 0.12
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(12%) tempModel.feb - FEBio 4.1.0
===== beginning time step 4 : 0.16 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.16
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.506267e-14 0.000000e+00
energy 4.084599e-07 3.418135e-10 4.084599e-09
displacement 4.134949e-03 4.134949e-03 4.134949e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.16
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.124059e-24 0.000000e+00
energy 4.084599e-07 4.411541e-18 4.084599e-09
displacement 4.134949e-03 3.113488e-09 4.127939e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.16
Data Record #1
===========================================================================
Step = 4
Time = 0.16
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 4
Time = 0.16
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 4
Time = 0.16
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(16%) tempModel.feb - FEBio 4.1.0
===== beginning time step 5 : 0.2 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.2
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.516283e-14 0.000000e+00
energy 4.077820e-07 3.393256e-10 4.077820e-09
displacement 4.120952e-03 4.120952e-03 4.120952e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.2
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.113133e-24 0.000000e+00
energy 4.077820e-07 4.330396e-18 4.077820e-09
displacement 4.120952e-03 3.070572e-09 4.114004e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.2
Data Record #1
===========================================================================
Step = 5
Time = 0.2
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 5
Time = 0.2
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 5
Time = 0.2
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(20%) tempModel.feb - FEBio 4.1.0
===== beginning time step 6 : 0.24 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.24
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.526455e-14 0.000000e+00
energy 4.071091e-07 3.368323e-10 4.071091e-09
displacement 4.107080e-03 4.107080e-03 4.107080e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.24
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.101646e-24 0.000000e+00
energy 4.071091e-07 4.248698e-18 4.071091e-09
displacement 4.107080e-03 3.027894e-09 4.100194e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.24
Data Record #1
===========================================================================
Step = 6
Time = 0.24
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 6
Time = 0.24
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 6
Time = 0.24
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(24%) tempModel.feb - FEBio 4.1.0
===== beginning time step 7 : 0.28 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.28
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.536791e-14 0.000000e+00
energy 4.064412e-07 3.343337e-10 4.064412e-09
displacement 4.093332e-03 4.093332e-03 4.093332e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.28
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.089605e-24 0.000000e+00
energy 4.064412e-07 4.166499e-18 4.064412e-09
displacement 4.093332e-03 2.985461e-09 4.086509e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.28
Data Record #1
===========================================================================
Step = 7
Time = 0.28
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 7
Time = 0.28
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 7
Time = 0.28
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(28%) tempModel.feb - FEBio 4.1.0
===== beginning time step 8 : 0.32 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.32
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.547299e-14 0.000000e+00
energy 4.057783e-07 3.318303e-10 4.057783e-09
displacement 4.079708e-03 4.079708e-03 4.079708e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.32
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.077021e-24 0.000000e+00
energy 4.057783e-07 4.083824e-18 4.057783e-09
displacement 4.079708e-03 2.943280e-09 4.072947e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.32
Data Record #1
===========================================================================
Step = 8
Time = 0.32
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 8
Time = 0.32
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 8
Time = 0.32
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(32%) tempModel.feb - FEBio 4.1.0
===== beginning time step 9 : 0.36 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.36
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.557986e-14 0.000000e+00
energy 4.051203e-07 3.293221e-10 4.051203e-09
displacement 4.066208e-03 4.066208e-03 4.066208e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.36
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.063927e-24 0.000000e+00
energy 4.051203e-07 4.000725e-18 4.051203e-09
displacement 4.066208e-03 2.901358e-09 4.059509e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.36
Data Record #1
===========================================================================
Step = 9
Time = 0.36
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 9
Time = 0.36
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 9
Time = 0.36
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(36%) tempModel.feb - FEBio 4.1.0
===== beginning time step 10 : 0.4 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.4
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.568862e-14 0.000000e+00
energy 4.044674e-07 3.268096e-10 4.044674e-09
displacement 4.052832e-03 4.052832e-03 4.052832e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.4
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.050320e-24 0.000000e+00
energy 4.044674e-07 3.917223e-18 4.044674e-09
displacement 4.052832e-03 2.859699e-09 4.046194e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.4
Data Record #1
===========================================================================
Step = 10
Time = 0.4
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 10
Time = 0.4
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 10
Time = 0.4
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(40%) tempModel.feb - FEBio 4.1.0
===== beginning time step 11 : 0.44 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.44
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.579934e-14 0.000000e+00
energy 4.038195e-07 3.242928e-10 4.038195e-09
displacement 4.039578e-03 4.039578e-03 4.039578e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.44
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.036211e-24 0.000000e+00
energy 4.038195e-07 3.833367e-18 4.038195e-09
displacement 4.039578e-03 2.818310e-09 4.033002e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.44
Data Record #1
===========================================================================
Step = 11
Time = 0.44
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 11
Time = 0.44
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 11
Time = 0.44
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(44%) tempModel.feb - FEBio 4.1.0
===== beginning time step 12 : 0.48 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.48
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.591210e-14 0.000000e+00
energy 4.031767e-07 3.217720e-10 4.031767e-09
displacement 4.026447e-03 4.026447e-03 4.026447e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.48
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.021639e-24 0.000000e+00
energy 4.031767e-07 3.749188e-18 4.031767e-09
displacement 4.026447e-03 2.777196e-09 4.019932e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.48
Data Record #1
===========================================================================
Step = 12
Time = 0.48
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 12
Time = 0.48
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 12
Time = 0.48
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(48%) tempModel.feb - FEBio 4.1.0
===== beginning time step 13 : 0.52 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.52
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.602700e-14 0.000000e+00
energy 4.025388e-07 3.192475e-10 4.025388e-09
displacement 4.013439e-03 4.013439e-03 4.013439e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.52
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.006599e-24 0.000000e+00
energy 4.025388e-07 3.664719e-18 4.025388e-09
displacement 4.013439e-03 2.736363e-09 4.006985e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.52
Data Record #1
===========================================================================
Step = 13
Time = 0.52
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 13
Time = 0.52
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 13
Time = 0.52
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(52%) tempModel.feb - FEBio 4.1.0
===== beginning time step 14 : 0.56 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.56
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.614411e-14 0.000000e+00
energy 4.019060e-07 3.167195e-10 4.019060e-09
displacement 4.000553e-03 4.000553e-03 4.000553e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.56
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.991128e-24 0.000000e+00
energy 4.019060e-07 3.579986e-18 4.019060e-09
displacement 4.000553e-03 2.695815e-09 3.994159e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.56
Data Record #1
===========================================================================
Step = 14
Time = 0.56
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 14
Time = 0.56
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 14
Time = 0.56
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(56%) tempModel.feb - FEBio 4.1.0
===== beginning time step 15 : 0.6 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.6
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.626353e-14 0.000000e+00
energy 4.012783e-07 3.141881e-10 4.012783e-09
displacement 3.987788e-03 3.987788e-03 3.987788e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.6
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.975226e-24 0.000000e+00
energy 4.012783e-07 3.495047e-18 4.012783e-09
displacement 3.987788e-03 2.655557e-09 3.981455e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.6
Data Record #1
===========================================================================
Step = 15
Time = 0.6
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 15
Time = 0.6
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 15
Time = 0.6
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(60%) tempModel.feb - FEBio 4.1.0
===== beginning time step 16 : 0.64 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.64
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.638534e-14 0.000000e+00
energy 4.006557e-07 3.116535e-10 4.006557e-09
displacement 3.975144e-03 3.975144e-03 3.975144e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.64
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.958924e-24 0.000000e+00
energy 4.006557e-07 3.409916e-18 4.006557e-09
displacement 3.975144e-03 2.615593e-09 3.968872e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.64
Data Record #1
===========================================================================
Step = 16
Time = 0.64
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 16
Time = 0.64
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 16
Time = 0.64
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(64%) tempModel.feb - FEBio 4.1.0
===== beginning time step 17 : 0.68 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.68
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.650963e-14 0.000000e+00
energy 4.000381e-07 3.091160e-10 4.000381e-09
displacement 3.962621e-03 3.962621e-03 3.962621e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.68
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.942226e-24 0.000000e+00
energy 4.000381e-07 3.324634e-18 4.000381e-09
displacement 3.962621e-03 2.575929e-09 3.956409e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.68
Data Record #1
===========================================================================
Step = 17
Time = 0.68
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 17
Time = 0.68
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 17
Time = 0.68
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(68%) tempModel.feb - FEBio 4.1.0
===== beginning time step 18 : 0.72 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.72
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.663651e-14 0.000000e+00
energy 3.994255e-07 3.065757e-10 3.994255e-09
displacement 3.950219e-03 3.950219e-03 3.950219e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.72
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.925160e-24 0.000000e+00
energy 3.994255e-07 3.239225e-18 3.994255e-09
displacement 3.950219e-03 2.536567e-09 3.944067e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.72
Data Record #1
===========================================================================
Step = 18
Time = 0.72
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 18
Time = 0.72
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 18
Time = 0.72
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(72%) tempModel.feb - FEBio 4.1.0
===== beginning time step 19 : 0.76 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.76
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.676605e-14 0.000000e+00
energy 3.988181e-07 3.040328e-10 3.988181e-09
displacement 3.937936e-03 3.937936e-03 3.937936e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.76
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.907735e-24 0.000000e+00
energy 3.988181e-07 3.153731e-18 3.988181e-09
displacement 3.937936e-03 2.497512e-09 3.931844e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.76
Data Record #1
===========================================================================
Step = 19
Time = 0.76
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 19
Time = 0.76
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 19
Time = 0.76
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(76%) tempModel.feb - FEBio 4.1.0
===== beginning time step 20 : 0.8 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.8
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.689837e-14 0.000000e+00
energy 3.982157e-07 3.014875e-10 3.982157e-09
displacement 3.925773e-03 3.925773e-03 3.925773e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.8
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.889977e-24 0.000000e+00
energy 3.982157e-07 3.068189e-18 3.982157e-09
displacement 3.925773e-03 2.458767e-09 3.919741e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.8
Data Record #1
===========================================================================
Step = 20
Time = 0.8
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 20
Time = 0.8
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 20
Time = 0.8
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(80%) tempModel.feb - FEBio 4.1.0
===== beginning time step 21 : 0.84 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.84
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.703354e-14 0.000000e+00
energy 3.976184e-07 2.989398e-10 3.976184e-09
displacement 3.913729e-03 3.913729e-03 3.913729e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.84
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.871896e-24 0.000000e+00
energy 3.976184e-07 2.982618e-18 3.976184e-09
displacement 3.913729e-03 2.420335e-09 3.907756e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.84
Data Record #1
===========================================================================
Step = 21
Time = 0.84
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 21
Time = 0.84
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 21
Time = 0.84
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(84%) tempModel.feb - FEBio 4.1.0
===== beginning time step 22 : 0.88 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.88
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.717167e-14 0.000000e+00
energy 3.970263e-07 2.963900e-10 3.970263e-09
displacement 3.901804e-03 3.901804e-03 3.901804e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.88
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.853507e-24 0.000000e+00
energy 3.970263e-07 2.897041e-18 3.970263e-09
displacement 3.901804e-03 2.382220e-09 3.895890e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.88
Data Record #1
===========================================================================
Step = 22
Time = 0.88
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 22
Time = 0.88
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 22
Time = 0.88
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(88%) tempModel.feb - FEBio 4.1.0
===== beginning time step 23 : 0.92 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.92
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.731287e-14 0.000000e+00
energy 3.964392e-07 2.938382e-10 3.964392e-09
displacement 3.889997e-03 3.889997e-03 3.889997e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.92
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.834853e-24 0.000000e+00
energy 3.964392e-07 2.811504e-18 3.964392e-09
displacement 3.889997e-03 2.344424e-09 3.884142e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.92
Data Record #1
===========================================================================
Step = 23
Time = 0.92
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 23
Time = 0.92
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 23
Time = 0.92
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(92%) tempModel.feb - FEBio 4.1.0
===== beginning time step 24 : 0.96 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 0.96
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.745723e-14 0.000000e+00
energy 3.958572e-07 2.912845e-10 3.958572e-09
displacement 3.878308e-03 3.878308e-03 3.878308e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 0.96
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.815919e-24 0.000000e+00
energy 3.958572e-07 2.726027e-18 3.958572e-09
displacement 3.878308e-03 2.306951e-09 3.872511e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 0.96
Data Record #1
===========================================================================
Step = 24
Time = 0.96
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 24
Time = 0.96
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 24
Time = 0.96
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(96%) tempModel.feb - FEBio 4.1.0 MUST POINT CONTROLLER: adjusting time step. dt = 0.04
===== beginning time step 25 : 1 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
1
Nonlinear solution status: time= 1
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 2.760485e-14 0.000000e+00
energy 3.952803e-07 2.887290e-10 3.952803e-09
displacement 3.866736e-03 3.866736e-03 3.866736e-09
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 2370
Nr of nonzeroes in stiffness matrix ....... : 150358
2
Nonlinear solution status: time= 1
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 2.222222e-10 1.796739e-24 0.000000e+00
energy 3.952803e-07 2.640650e-18 3.952803e-09
displacement 3.866736e-03 2.269802e-09 3.860998e-09
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 1
Data Record #1
===========================================================================
Step = 25
Time = 1
Data = ux;uy;uz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 25
Time = 1
Data = Rx;Ry;Rz
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 25
Time = 1
Data = s3
File = /home/kevin/DATA/Code/matlab/GIBBON/data/temp/tempModel_stress_out.txt
]0;(100%) tempModel.feb - FEBio 4.1.0
N O N L I N E A R I T E R A T I O N I N F O R M A T I O N
Number of time steps completed .................... : 25
Total number of equilibrium iterations ............ : 50
Average number of equilibrium iterations .......... : 2
Total number of right hand evaluations ............ : 75
Total number of stiffness reformations ............ : 50
L I N E A R S O L V E R S T A T S
Total calls to linear solver ........ : 50
Avg iterations per solve ............ : 1
Time in linear solver: 0:00:01
Elapsed time : 0:00:01
N O R M A L T E R M I N A T I O N
]0;(100%) tempModel.feb - FEBio 4.1.0 * Log file found. 29-May-2023 10:58:48
# Parsing log file... 29-May-2023 10:58:48
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.04 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.08 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.12 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.16 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.2 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.24 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.28 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.32 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.36 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.4 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.44 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.48 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.52 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.56 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.6 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.64 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.68 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.72 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.76 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.8 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.84 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.88 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.92 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 0.96 29-May-2023 10:58:49
number of iterations : 2 29-May-2023 10:58:49
number of reformations : 2 29-May-2023 10:58:49
------- converged at time : 1 29-May-2023 10:58:49
Elapsed time : 0:00:01 29-May-2023 10:58:49
N O R M A L T E R M I N A T I O N
# Done 29-May-2023 10:58:49
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Import FEBio results
if runFlag==1 %i.e. a succesful run
Importing nodal displacements from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_disp),0,1);
%Access data
N_disp_mat=dataStruct.data; %Displacement
timeVec=dataStruct.time; %Time
%Create deformed coordinate set
V_DEF=N_disp_mat+repmat(V,[1 1 size(N_disp_mat,3)]);
Importing element stress from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_stress),0,1);
%Access data
E_stress_mat=dataStruct.data;
% Importing element stress from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_force),0,1);
Plotting the simulated results using anim8 to visualize and animate deformations
[CV]=faceToVertexMeasure(E,V,E_stress_mat(:,:,end));
% Create basic view and store graphics handle to initiate animation
hf=cFigure; %Open figure
gtitle([febioFebFileNamePart,': Press play to animate']);
title('$\sigma_{3}$ [MPa]','Interpreter','Latex')
hp=gpatch(Fb,V_DEF(:,:,end),CV,'k',0.8); %Add graphics object to animate
hp.Marker='.';
hp.MarkerSize=markerSize2;
hp.FaceColor='interp';
axisGeom(gca,fontSize);
colormap(flipud(turbo(250))); colorbar;
caxis([min(E_stress_mat(:)) max(E_stress_mat(:))]);
axis(axisLim(V_DEF)); %Set axis limits statically
camlight headlight;
% Set up animation features
animStruct.Time=timeVec; %The time vector
for qt=1:1:size(N_disp_mat,3) %Loop over time increments
[CV]=faceToVertexMeasure(E,V,E_stress_mat(:,:,qt));
%Set entries in animation structure
animStruct.Handles{qt}=[hp hp]; %Handles of objects to animate
animStruct.Props{qt}={'Vertices','CData'}; %Properties of objects to animate
animStruct.Set{qt}={V_DEF(:,:,qt),CV}; %Property values for to set in order to animate
end
anim8(hf,animStruct); %Initiate animation feature
drawnow;
end
GIBBON www.gibboncode.org
Kevin Mattheus Moerman, [email protected]
GIBBON footer text
License: https://github.com/gibbonCode/GIBBON/blob/master/LICENSE
GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for image segmentation, image-based modeling, meshing, and finite element analysis.
Copyright (C) 2006-2023 Kevin Mattheus Moerman and the GIBBON contributors
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.