DEMO_febio_0081_interface_tear_sticky_01.m
Below is a demonstration for:
- Building geometry for a bar sample
- Defining the boundary conditions
- Coding the febio structure
- Running the model
- Importing and visualizing the displacement and stress results
Contents
Keywords
- febio_spec version 4.0
- febio, FEBio
- tensile loading
- displacement control, displacement boundary condition
- hexahedral elements, hex8
- bar, box, rectangular
- sticky interface
- max traction
- static, solid
- neo-hookean
- displacement logfile
- stress logfile
clear; close all; clc;
Plot settings
fontSize=20;
faceAlpha1=0.8;
faceAlpha2=0.5;
markerSize=40;
markerSize2=35;
lineWidth=3;
cMap=viridis(20); %colormap
Control parameters
% Path names defaultFolder = fileparts(fileparts(mfilename('fullpath'))); savePath=fullfile(defaultFolder,'data','temp'); % Defining file names febioFebFileNamePart='tempModel'; febioFebFileName=fullfile(savePath,[febioFebFileNamePart,'.feb']); %FEB file name febioLogFileName=[febioFebFileNamePart,'.txt']; %FEBio log file name febioLogFileName_disp=[febioFebFileNamePart,'_disp_out.txt']; %Log file name for exporting displacement febioLogFileName_stress=[febioFebFileNamePart,'_stress_out.txt']; %Log file name for exporting stress sigma_z febioLogFileName_stretch=[febioFebFileNamePart,'_stretch_out.txt']; %Log file name for exporting stretch U_z febioLogFileName_stress_prin=[febioFebFileNamePart,'_stress_prin_out.txt']; %Log file name for exporting principal stresses febioLogFileName_stretch_prin=[febioFebFileNamePart,'_stretch_prin_out.txt']; %Log file name for exporting principal stretches febioLogFileName_force=[febioFebFileNamePart,'_force_out.txt']; %Log file name for exporting force %Specifying dimensions and number of elements sampleWidth=10; %Width sampleThickness=sampleWidth/4; %Thickness sampleHeight=sampleWidth*2; %Height pointSpacings=2*ones(1,3); %Desired point spacing between nodes numElementsWidth=ceil(sampleWidth/pointSpacings(1)); %Number of elements in dir 1 numElementsThickness=ceil(sampleThickness/pointSpacings(2)); %Number of elements in dir 2 numElementsHeight=ceil(0.5*(sampleHeight/pointSpacings(3))); %Number of elements in dir 3 %Define applied displacement appliedStrain=1.5; %Linear strain (Only used to compute applied stretch) loadingOption='tension'; % or 'tension' switch loadingOption case 'compression' stretchLoad=1-appliedStrain; %The applied stretch for uniaxial loading case 'tension' stretchLoad=1+appliedStrain; %The applied stretch for uniaxial loading end displacementMagnitude=(stretchLoad*sampleHeight)-sampleHeight; %The displacement magnitude %Material parameter set E_youngs1=0.1; %Material Young's modulus nu1=0.4; %Material Poisson's ratio g1=1/2; %Viscoelastic QLV proportional coefficient t1=1; %Viscoelastic QLV time coefficient % FEA control settings timeTotal=10; numTimeSteps=20; %Number of time steps desired max_refs=25; %Max reforms max_ups=0; %Set to zero to use full-Newton iterations opt_iter=6; %Optimum number of iterations max_retries=5; %Maximum number of retires dtmin=(timeTotal/numTimeSteps)/100; %Minimum time step size dtmax=timeTotal/numTimeSteps; %Maximum time step size symmetric_stiffness=0; runMode='internal';% 'internal' or 'external' %Contact parameters contactPenalty=1; laugon=0; minaug=1; maxaug=10; max_traction=0.04;
Creating model geometry and mesh
A box is created with tri-linear hexahedral (hex8) elements using the hexMeshBox function. The function offers the boundary faces with seperate labels for the top, bottom, left, right, front, and back sides. As such these can be used to define boundary conditions on the exterior.
% Create a box with hexahedral elements cubeDimensions=[sampleWidth sampleThickness sampleHeight]; %Dimensions cubeElementNumbers=[numElementsWidth numElementsThickness numElementsHeight]; %Number of elements outputStructType=2; %A structure compatible with mesh view [meshStruct]=hexMeshBox(cubeDimensions,cubeElementNumbers,outputStructType); %Access elements, nodes, and faces from the structure E1=meshStruct.elements; %The elements V1=meshStruct.nodes; %The nodes (vertices) Fb1=meshStruct.facesBoundary; %The boundary faces Cb1=meshStruct.boundaryMarker; %The "colors" or labels for the boundary faces V1(:,3)=V1(:,3)-min(V1(:,3)); %Clone to make second half E2=E1; V2=V1; V2(:,3)=V2(:,3)-max(V2(:,3)); Fb2=Fb1; Cb2=Cb1+max(Cb1); E=[E1;E2+size(V1,1)]; V=[V1;V2]; F=element2patch(E); Fb=[Fb1;Fb2+size(V1,1)]; Cb=[Cb1;Cb2];
Plotting model boundary surfaces and a cut view
hFig=cFigure; subplot(1,2,1); hold on; title('Model boundary surfaces and labels','FontSize',fontSize); gpatch(Fb,V,Cb,'k',faceAlpha1); colormap(gjet(6)); icolorbar; axisGeom(gca,fontSize); hs=subplot(1,2,2); hold on; title('Cut view of solid mesh','FontSize',fontSize); optionStruct.hFig=[hFig hs]; meshView(meshStruct,optionStruct); axisGeom(gca,fontSize); drawnow;
Defining the boundary conditions
The visualization of the model boundary shows colors for each side of the cube. These labels can be used to define boundary conditions.
%Define supported node sets bcSupportList=unique(Fb(Cb==11,:)); %Node set part of selected face %Prescribed displacement nodes bcPrescribeList=unique(Fb(Cb==6,:)); %Node set part of selected face
Define contact surfaces
% The bottom of the top part F_contact_secondary=(Fb(Cb==5,:)); % The top of the bottom part F_contact_primary=(Fb(Cb==12,:)); % Plotting surface models cFigure; hold on; title('Contact sets and normal directions','FontSize',fontSize); gpatch(Fb,V,'kw','none',faceAlpha2); hl(1)=gpatch(F_contact_secondary,V,'g','k',1); patchNormPlot(F_contact_secondary,V); hl(2)=gpatch(F_contact_primary,V,'b','k',1); patchNormPlot(F_contact_primary,V); legend(hl,{'Secondary','Primary'}); axisGeom(gca,fontSize); camlight headlight; drawnow;
Visualizing boundary conditions. Markers plotted on the semi-transparent model denote the nodes in the various boundary condition lists.
hf=cFigure; title('Boundary conditions','FontSize',fontSize); xlabel('X','FontSize',fontSize); ylabel('Y','FontSize',fontSize); zlabel('Z','FontSize',fontSize); hold on; gpatch(Fb,V,'kw','k',0.5); hl(1)=plotV(V(bcSupportList,:),'r.','MarkerSize',markerSize); hl(2)=plotV(V(bcPrescribeList,:),'k.','MarkerSize',markerSize); legend(hl,{'BC xyz support','BC xy support and z prescribe'}); axisGeom(gca,fontSize); camlight headlight; drawnow;
Defining the FEBio input structure
See also febioStructTemplate and febioStruct2xml and the FEBio user manual.
%Get a template with default settings [febio_spec]=febioStructTemplate; %febio_spec version febio_spec.ATTR.version='4.0'; %Module section febio_spec.Module.ATTR.type='solid'; %Control section febio_spec.Control.analysis='DYNAMIC'; febio_spec.Control.time_steps=numTimeSteps; febio_spec.Control.step_size=timeTotal/numTimeSteps; febio_spec.Control.solver.max_refs=max_refs; febio_spec.Control.solver.qn_method.max_ups=max_ups; febio_spec.Control.time_stepper.dtmin=dtmin; febio_spec.Control.time_stepper.dtmax=dtmax; febio_spec.Control.time_stepper.max_retries=max_retries; febio_spec.Control.time_stepper.opt_iter=opt_iter; febio_spec.Control.solver.symmetric_stiffness=symmetric_stiffness; %Material section materialName1='Material1'; febio_spec.Material.material{1}.ATTR.name=materialName1; % febio_spec.Material.material{1}.ATTR.name=materialName1; % febio_spec.Material.material{1}.ATTR.type='neo-Hookean'; % febio_spec.Material.material{1}.ATTR.id=1; % febio_spec.Material.material{1}.E=E_youngs1; % febio_spec.Material.material{1}.v=nu1; % febio_spec.Material.material{1}.density=1e-9; %Viscoelastic part febio_spec.Material.material{1}.ATTR.type='viscoelastic'; febio_spec.Material.material{1}.ATTR.id=1; febio_spec.Material.material{1}.g1=g1; febio_spec.Material.material{1}.t1=t1; febio_spec.Material.material{1}.density=1e-9; %Elastic part febio_spec.Material.material{1}.elastic{1}.ATTR.type='neo-Hookean'; febio_spec.Material.material{1}.elastic{1}.E=E_youngs1; febio_spec.Material.material{1}.elastic{1}.v=nu1; febio_spec.Material.material{1}.elastic{1}.density=1e-9; % Mesh section % -> Nodes febio_spec.Mesh.Nodes{1}.ATTR.name='Object1'; %The node set name febio_spec.Mesh.Nodes{1}.node.ATTR.id=(1:size(V,1))'; %The node id's febio_spec.Mesh.Nodes{1}.node.VAL=V; %The nodel coordinates % -> Elements partName1='Part1'; febio_spec.Mesh.Elements{1}.ATTR.name=partName1; %Name of this part febio_spec.Mesh.Elements{1}.ATTR.type='hex8'; %Element type febio_spec.Mesh.Elements{1}.elem.ATTR.id=(1:1:size(E,1))'; %Element id's febio_spec.Mesh.Elements{1}.elem.VAL=E; %The element matrix % -> NodeSets nodeSetName1='bcSupportList'; nodeSetName2='bcPrescribeList'; febio_spec.Mesh.NodeSet{1}.ATTR.name=nodeSetName1; febio_spec.Mesh.NodeSet{1}.VAL=mrow(bcSupportList); febio_spec.Mesh.NodeSet{2}.ATTR.name=nodeSetName2; febio_spec.Mesh.NodeSet{2}.VAL=mrow(bcPrescribeList); %MeshDomains section febio_spec.MeshDomains.SolidDomain.ATTR.name=partName1; febio_spec.MeshDomains.SolidDomain.ATTR.mat=materialName1; % -> Surfaces surfaceName1='contactSurface1'; febio_spec.Mesh.Surface{1}.ATTR.name=surfaceName1; febio_spec.Mesh.Surface{1}.quad4.ATTR.id=(1:1:size(F_contact_primary,1))'; febio_spec.Mesh.Surface{1}.quad4.VAL=F_contact_primary; surfaceName2='contactSurface2'; febio_spec.Mesh.Surface{2}.ATTR.name=surfaceName2; febio_spec.Mesh.Surface{2}.quad4.ATTR.id=(1:1:size(F_contact_secondary,1))'; febio_spec.Mesh.Surface{2}.quad4.VAL=F_contact_secondary; % -> Surface pairs contactPairName='Contact1'; febio_spec.Mesh.SurfacePair{1}.ATTR.name=contactPairName; febio_spec.Mesh.SurfacePair{1}.primary=surfaceName1; febio_spec.Mesh.SurfacePair{1}.secondary=surfaceName2; %Boundary condition section % -> Fix boundary conditions febio_spec.Boundary.bc{1}.ATTR.name='zero_displacement_xyz'; febio_spec.Boundary.bc{1}.ATTR.type='zero displacement'; febio_spec.Boundary.bc{1}.ATTR.node_set=nodeSetName1; febio_spec.Boundary.bc{1}.x_dof=1; febio_spec.Boundary.bc{1}.y_dof=1; febio_spec.Boundary.bc{1}.z_dof=1; febio_spec.Boundary.bc{2}.ATTR.name='zero_displacement_xy'; febio_spec.Boundary.bc{2}.ATTR.type='zero displacement'; febio_spec.Boundary.bc{2}.ATTR.node_set=nodeSetName2; febio_spec.Boundary.bc{2}.x_dof=1; febio_spec.Boundary.bc{2}.y_dof=1; febio_spec.Boundary.bc{2}.z_dof=0; febio_spec.Boundary.bc{3}.ATTR.name='prescibed_displacement_z'; febio_spec.Boundary.bc{3}.ATTR.type='prescribed displacement'; febio_spec.Boundary.bc{3}.ATTR.node_set=nodeSetName2; febio_spec.Boundary.bc{3}.dof='z'; febio_spec.Boundary.bc{3}.value.ATTR.lc=1; febio_spec.Boundary.bc{3}.value.VAL=displacementMagnitude; febio_spec.Boundary.bc{3}.relative=0; %Contact section febio_spec.Contact.contact{1}.ATTR.type='sticky'; febio_spec.Contact.contact{1}.ATTR.surface_pair=contactPairName; febio_spec.Contact.contact{1}.laugon=laugon; febio_spec.Contact.contact{1}.tolerance=0.2; febio_spec.Contact.contact{1}.minaug=minaug; febio_spec.Contact.contact{1}.maxaug=maxaug; febio_spec.Contact.contact{1}.search_tolerance=0.01; febio_spec.Contact.contact{1}.max_traction=max_traction; febio_spec.Contact.contact{1}.snap_tol=0.01; febio_spec.Contact.contact{1}.penalty=contactPenalty; %LoadData section % -> load_controller febio_spec.LoadData.load_controller{1}.ATTR.name='LC_1'; febio_spec.LoadData.load_controller{1}.ATTR.id=1; febio_spec.LoadData.load_controller{1}.ATTR.type='loadcurve'; febio_spec.LoadData.load_controller{1}.interpolate='LINEAR'; %febio_spec.LoadData.load_controller{1}.extend='CONSTANT'; febio_spec.LoadData.load_controller{1}.points.pt.VAL=[0 0; timeTotal 1]; %Output section % -> log file febio_spec.Output.logfile.ATTR.file=febioLogFileName; febio_spec.Output.logfile.node_data{1}.ATTR.file=febioLogFileName_disp; febio_spec.Output.logfile.node_data{1}.ATTR.data='ux;uy;uz'; febio_spec.Output.logfile.node_data{1}.ATTR.delim=','; febio_spec.Output.logfile.node_data{2}.ATTR.file=febioLogFileName_force; febio_spec.Output.logfile.node_data{2}.ATTR.data='Rx;Ry;Rz'; febio_spec.Output.logfile.node_data{2}.ATTR.delim=','; febio_spec.Output.logfile.element_data{1}.ATTR.file=febioLogFileName_stress; febio_spec.Output.logfile.element_data{1}.ATTR.data='sz'; febio_spec.Output.logfile.element_data{1}.ATTR.delim=','; febio_spec.Output.logfile.element_data{2}.ATTR.file=febioLogFileName_stretch; febio_spec.Output.logfile.element_data{2}.ATTR.data='Uz'; febio_spec.Output.logfile.element_data{2}.ATTR.delim=','; febio_spec.Output.logfile.element_data{3}.ATTR.file=febioLogFileName_stress_prin; febio_spec.Output.logfile.element_data{3}.ATTR.data='s1;s2;s3'; febio_spec.Output.logfile.element_data{3}.ATTR.delim=','; febio_spec.Output.logfile.element_data{4}.ATTR.file=febioLogFileName_stretch_prin; febio_spec.Output.logfile.element_data{4}.ATTR.data='U1;U2;U3'; febio_spec.Output.logfile.element_data{4}.ATTR.delim=','; % Plotfile section febio_spec.Output.plotfile.compression=0;
Quick viewing of the FEBio input file structure
The febView function can be used to view the xml structure in a MATLAB figure window.
febView(febio_spec); %Viewing the febio file
Exporting the FEBio input file
Exporting the febio_spec structure to an FEBio input file is done using the febioStruct2xml function.
febioStruct2xml(febio_spec,febioFebFileName); %Exporting to file and domNode %system(['gedit ',febioFebFileName,' &']);
Running the FEBio analysis
To run the analysis defined by the created FEBio input file the runMonitorFEBio function is used. The input for this function is a structure defining job settings e.g. the FEBio input file name. The optional output runFlag informs the user if the analysis was run succesfully.
febioAnalysis.run_filename=febioFebFileName; %The input file name febioAnalysis.run_logname=febioLogFileName; %The name for the log file febioAnalysis.disp_on=1; %Display information on the command window febioAnalysis.runMode=runMode; febioAnalysis.maxLogCheckTime=10; %Max log file checking time [runFlag]=runMonitorFEBio(febioAnalysis);%START FEBio NOW!!!!!!!!
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
--------> RUNNING/MONITORING FEBIO JOB <-------- 04-May-2023 17:59:21
FEBio path: /home/kevin/FEBioStudio/bin/febio4
# Attempt removal of existing log files 04-May-2023 17:59:21
* Removal succesful 04-May-2023 17:59:21
# Attempt removal of existing .xplt files 04-May-2023 17:59:21
* Removal succesful 04-May-2023 17:59:21
# Starting FEBio... 04-May-2023 17:59:21
Max. total analysis time is: Inf s
===========================================================================
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|___|| |________|| |_________// |__|| \_________//
F I N I T E E L E M E N T S F O R B I O M E C H A N I C S
version 4.1.0
FEBio is a registered trademark.
copyright (c) 2006-2023 - All rights reserved
===========================================================================
Default linear solver: pardiso
Success loading plugin libFEBioChem.so (version 1.0.0)
Success loading plugin libFEBioHeat.so (version 2.0.0)
Reading file /home/kevin/GIBBON/data/temp/tempModel.feb ...SUCCESS!
Data Record #1
===========================================================================
Step = 0
Time = 0
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 0
Time = 0
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 0
Time = 0
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 0
Time = 0
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 0
Time = 0
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 0
Time = 0
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(0%) tempModel.feb - FEBio 4.1.0 ]0;(0%) tempModel.feb - FEBio 4.1.0
*************************************************************************
* Selecting linear solver pardiso *
*************************************************************************
===== beginning time step 1 : 0.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 0.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.435914e+00 1.938846e-04 0.000000e+00
energy 3.993560e+00 1.463595e-03 3.993560e-02
displacement 1.288015e+02 1.288015e+02 1.288015e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 0.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.435914e+00 4.009175e-11 0.000000e+00
energy 3.993560e+00 5.479152e-08 3.993560e-02
displacement 1.288015e+02 3.282204e-04 1.288250e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 0.5
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.435914e+00 2.305644e-24 0.000000e+00
energy 3.993560e+00 6.100842e-18 3.993560e-02
displacement 1.288015e+02 7.189092e-11 1.288250e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 0.5
Data Record #1
===========================================================================
Step = 1
Time = 0.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 1
Time = 0.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 1
Time = 0.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 1
Time = 0.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 1
Time = 0.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 1
Time = 0.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(5%) tempModel.feb - FEBio 4.1.0
===== beginning time step 2 : 1 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 1
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.343082e+00 1.734879e-04 0.000000e+00
energy 3.770785e+00 1.434334e-03 3.770785e-02
displacement 1.288461e+02 1.288461e+02 1.288461e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 1
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.343082e+00 3.243607e-11 0.000000e+00
energy 3.770785e+00 4.568857e-08 3.770785e-02
displacement 1.288461e+02 2.783219e-04 1.288658e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 1
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.343082e+00 1.515254e-24 0.000000e+00
energy 3.770785e+00 4.347326e-18 3.770785e-02
displacement 1.288461e+02 5.511607e-11 1.288657e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 1
Data Record #1
===========================================================================
Step = 2
Time = 1
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 2
Time = 1
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 2
Time = 1
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 2
Time = 1
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 2
Time = 1
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 2
Time = 1
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(10%) tempModel.feb - FEBio 4.1.0
===== beginning time step 3 : 1.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 1.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.260910e+00 1.557978e-04 0.000000e+00
energy 3.564688e+00 1.404922e-03 3.564688e-02
displacement 1.288829e+02 1.288829e+02 1.288829e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 1.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.260910e+00 2.636525e-11 0.000000e+00
energy 3.564688e+00 3.825637e-08 3.564688e-02
displacement 1.288829e+02 2.371381e-04 1.288984e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 1.5
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.260910e+00 1.004607e-24 0.000000e+00
energy 3.564688e+00 3.121917e-18 3.564688e-02
displacement 1.288829e+02 4.294296e-11 1.288984e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 1.5
Data Record #1
===========================================================================
Step = 3
Time = 1.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 3
Time = 1.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 3
Time = 1.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 3
Time = 1.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 3
Time = 1.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 3
Time = 1.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(15%) tempModel.feb - FEBio 4.1.0
===== beginning time step 4 : 2 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 2
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.188081e+00 1.403900e-04 0.000000e+00
energy 3.374770e+00 1.376361e-03 3.374770e-02
displacement 1.289180e+02 1.289180e+02 1.289180e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 2
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.188081e+00 2.153371e-11 0.000000e+00
energy 3.374770e+00 3.216714e-08 3.374770e-02
displacement 1.289180e+02 2.029509e-04 1.289297e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 2
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.188081e+00 6.713170e-25 0.000000e+00
energy 3.374770e+00 2.258662e-18 3.374770e-02
displacement 1.289180e+02 3.395117e-11 1.289297e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 2
Data Record #1
===========================================================================
Step = 4
Time = 2
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 4
Time = 2
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 4
Time = 2
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 4
Time = 2
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 4
Time = 2
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 4
Time = 2
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(20%) tempModel.feb - FEBio 4.1.0
===== beginning time step 5 : 2.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 2.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.123343e+00 1.269133e-04 0.000000e+00
energy 3.199958e+00 1.350457e-03 3.199958e-02
displacement 1.289443e+02 1.289443e+02 1.289443e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 2.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.123343e+00 1.767206e-11 0.000000e+00
energy 3.199958e+00 2.715908e-08 3.199958e-02
displacement 1.289443e+02 1.744528e-04 1.289521e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 2.5
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.123343e+00 4.529549e-25 0.000000e+00
energy 3.199958e+00 1.645938e-18 3.199958e-02
displacement 1.289443e+02 2.721161e-11 1.289521e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 2.5
Data Record #1
===========================================================================
Step = 5
Time = 2.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 5
Time = 2.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 5
Time = 2.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 5
Time = 2.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 5
Time = 2.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 5
Time = 2.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(25%) tempModel.feb - FEBio 4.1.0
===== beginning time step 6 : 3 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 3
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.065560e+00 1.150796e-04 0.000000e+00
energy 3.038996e+00 1.326828e-03 3.038996e-02
displacement 1.289613e+02 1.289613e+02 1.289613e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 3
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.065560e+00 1.457166e-11 0.000000e+00
energy 3.038996e+00 2.302417e-08 3.038996e-02
displacement 1.289613e+02 1.506462e-04 1.289651e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 3
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.065560e+00 3.085768e-25 0.000000e+00
energy 3.038996e+00 1.209738e-18 3.038996e-02
displacement 1.289613e+02 2.209014e-11 1.289651e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 3
Data Record #1
===========================================================================
Step = 6
Time = 3
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 6
Time = 3
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 6
Time = 3
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 6
Time = 3
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 6
Time = 3
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 6
Time = 3
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(30%) tempModel.feb - FEBio 4.1.0
===== beginning time step 7 : 3.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 3.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.013744e+00 1.046505e-04 0.000000e+00
energy 2.890599e+00 1.304838e-03 2.890599e-02
displacement 1.289685e+02 1.289685e+02 1.289685e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 3.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.013744e+00 1.207086e-11 0.000000e+00
energy 2.890599e+00 1.959670e-08 2.890599e-02
displacement 1.289685e+02 1.307401e-04 1.289685e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
3
Nonlinear solution status: time= 3.5
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.013744e+00 2.116388e-25 0.000000e+00
energy 2.890599e+00 8.942353e-19 2.890599e-02
displacement 1.289685e+02 1.814697e-11 1.289685e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 3.5
Data Record #1
===========================================================================
Step = 7
Time = 3.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 7
Time = 3.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 7
Time = 3.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 7
Time = 3.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 7
Time = 3.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 7
Time = 3.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(35%) tempModel.feb - FEBio 4.1.0
===== beginning time step 8 : 4 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 4
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 9.670510e-01 9.542702e-05 0.000000e+00
energy 2.753544e+00 1.283792e-03 2.753544e-02
displacement 1.289662e+02 1.289662e+02 1.289662e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 4
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 9.670510e-01 1.004425e-11 0.000000e+00
energy 2.753544e+00 1.674442e-08 2.753544e-02
displacement 1.289662e+02 1.140929e-04 1.289623e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 4
Data Record #1
===========================================================================
Step = 8
Time = 4
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 8
Time = 4
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 8
Time = 4
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 8
Time = 4
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 8
Time = 4
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 8
Time = 4
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(40%) tempModel.feb - FEBio 4.1.0
===== beginning time step 9 : 4.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 4.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 9.247650e-01 8.724193e-05 0.000000e+00
energy 2.626707e+00 1.263056e-03 2.626707e-02
displacement 1.289548e+02 1.289548e+02 1.289548e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 4.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 9.247650e-01 8.394047e-12 0.000000e+00
energy 2.626707e+00 1.436122e-08 2.626707e-02
displacement 1.289548e+02 1.001732e-04 1.289472e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 4.5
Data Record #1
===========================================================================
Step = 9
Time = 4.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 9
Time = 4.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 9
Time = 4.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 9
Time = 4.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 9
Time = 4.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 9
Time = 4.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(45%) tempModel.feb - FEBio 4.1.0
===== beginning time step 10 : 5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 8.862877e-01 7.995767e-05 0.000000e+00
energy 2.509079e+00 1.242235e-03 2.509079e-02
displacement 1.289350e+02 1.289350e+02 1.289350e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 8.862877e-01 7.044660e-12 0.000000e+00
energy 2.509079e+00 1.236284e-08 2.509079e-02
displacement 1.289350e+02 8.854033e-05 1.289240e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 5
Data Record #1
===========================================================================
Step = 10
Time = 5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 10
Time = 5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 10
Time = 5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 10
Time = 5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 10
Time = 5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 10
Time = 5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(50%) tempModel.feb - FEBio 4.1.0
===== beginning time step 11 : 5.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 5.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 8.511133e-01 7.345477e-05 0.000000e+00
energy 2.399760e+00 1.220979e-03 2.399760e-02
displacement 1.289078e+02 1.289078e+02 1.289078e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 5.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 8.511133e-01 5.936154e-12 0.000000e+00
energy 2.399760e+00 1.068053e-08 2.399760e-02
displacement 1.289078e+02 7.881919e-05 1.288933e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 5.5
Data Record #1
===========================================================================
Step = 11
Time = 5.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 11
Time = 5.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 11
Time = 5.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 11
Time = 5.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 11
Time = 5.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 11
Time = 5.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(55%) tempModel.feb - FEBio 4.1.0
===== beginning time step 12 : 6 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 6
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 8.188176e-01 6.763288e-05 0.000000e+00
energy 2.297959e+00 1.199098e-03 2.297959e-02
displacement 1.288737e+02 1.288737e+02 1.288737e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 6
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 8.188176e-01 5.021603e-12 0.000000e+00
energy 2.297959e+00 9.259055e-09 2.297959e-02
displacement 1.288737e+02 7.069408e-05 1.288562e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 6
Data Record #1
===========================================================================
Step = 12
Time = 6
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 12
Time = 6
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 12
Time = 6
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 12
Time = 6
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 12
Time = 6
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 12
Time = 6
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(60%) tempModel.feb - FEBio 4.1.0
===== beginning time step 13 : 6.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 6.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 7.890427e-01 6.240650e-05 0.000000e+00
energy 2.202975e+00 1.176504e-03 2.202975e-02
displacement 1.288337e+02 1.288337e+02 1.288337e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
2
Nonlinear solution status: time= 6.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 7.890427e-01 4.263922e-12 0.000000e+00
energy 2.202975e+00 8.053611e-09 2.202975e-02
displacement 1.288337e+02 6.389809e-05 1.288132e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 6.5
Data Record #1
===========================================================================
Step = 13
Time = 6.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 13
Time = 6.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 13
Time = 6.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 13
Time = 6.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 13
Time = 6.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 13
Time = 6.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(65%) tempModel.feb - FEBio 4.1.0
===== beginning time step 14 : 7 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 28288
1
Nonlinear solution status: time= 7
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 7.614861e-01 1.418854e-01 0.000000e+00
energy 2.114194e+00 1.021342e-03 2.114194e-02
displacement 1.287885e+02 1.287885e+02 1.287885e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 7
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 7.614861e-01 3.579934e+00 0.000000e+00
energy 2.114194e+00 1.462526e+01 2.114194e-02
displacement 1.287885e+02 1.010213e+04 1.070420e-02
*************************************************************************
* WARNING *
* Problem is diverging. Stiffness matrix will now be reformed *
*************************************************************************
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
3
Nonlinear solution status: time= 7
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 3.579934e+00 1.047166e-02 0.000000e+00
energy 1.462526e+01 4.082455e-01 1.462526e-01
displacement 1.287885e+02 2.901355e+02 7.500192e-03
Reforming stiffness matrix: reformation #4
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
4
Nonlinear solution status: time= 7
stiffness updates = 0
right hand side evaluations = 5
stiffness matrix reformations = 4
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 3.579934e+00 2.842833e-05 0.000000e+00
energy 1.462526e+01 2.797188e-03 1.462526e-01
displacement 1.287885e+02 1.842796e+01 6.783222e-03
Reforming stiffness matrix: reformation #5
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
5
Nonlinear solution status: time= 7
stiffness updates = 0
right hand side evaluations = 6
stiffness matrix reformations = 5
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 3.579934e+00 2.786567e-11 0.000000e+00
energy 1.462526e+01 1.193534e-07 1.462526e-01
displacement 1.287885e+02 1.846071e-02 6.761231e-03
Reforming stiffness matrix: reformation #6
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
6
Nonlinear solution status: time= 7
stiffness updates = 0
right hand side evaluations = 7
stiffness matrix reformations = 6
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 3.579934e+00 7.340572e-23 0.000000e+00
energy 1.462526e+01 2.053228e-16 1.462526e-01
displacement 1.287885e+02 2.609887e-08 6.761205e-03
convergence summary
number of iterations : 6
number of reformations : 6
------- converged at time : 7
Data Record #1
===========================================================================
Step = 14
Time = 7
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 14
Time = 7
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 14
Time = 7
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 14
Time = 7
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 14
Time = 7
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 14
Time = 7
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(70%) tempModel.feb - FEBio 4.1.0
===== beginning time step 15 : 7.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
1
Nonlinear solution status: time= 7.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.245698e+00 2.042513e-05 0.000000e+00
energy 3.945942e+00 3.894685e-03 3.945942e-02
displacement 2.888773e+02 2.888773e+02 2.888773e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 7.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.245698e+00 1.427912e-12 0.000000e+00
energy 3.945942e+00 1.846610e-08 3.945942e-02
displacement 2.888773e+02 5.202166e-03 2.870289e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
3
Nonlinear solution status: time= 7.5
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.245698e+00 4.952875e-25 0.000000e+00
energy 3.945942e+00 4.433346e-18 3.945942e-02
displacement 2.888773e+02 2.425978e-09 2.870277e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 7.5
Data Record #1
===========================================================================
Step = 15
Time = 7.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 15
Time = 7.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 15
Time = 7.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 15
Time = 7.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 15
Time = 7.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 15
Time = 7.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(75%) tempModel.feb - FEBio 4.1.0
===== beginning time step 16 : 8 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
1
Nonlinear solution status: time= 8
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.298491e+00 4.280855e-06 0.000000e+00
energy 4.001064e+00 1.653706e-03 4.001064e-02
displacement 2.566368e+02 2.566368e+02 2.566368e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 8
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.298491e+00 6.540613e-14 0.000000e+00
energy 4.001064e+00 1.837923e-09 4.001064e-02
displacement 2.566368e+02 1.088411e-03 2.558766e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
3
Nonlinear solution status: time= 8
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.298491e+00 1.210429e-27 0.000000e+00
energy 4.001064e+00 4.321309e-20 4.001064e-02
displacement 2.566368e+02 1.065647e-10 2.558764e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 8
Data Record #1
===========================================================================
Step = 16
Time = 8
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 16
Time = 8
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 16
Time = 8
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 16
Time = 8
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 16
Time = 8
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 16
Time = 8
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(80%) tempModel.feb - FEBio 4.1.0
===== beginning time step 17 : 8.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
1
Nonlinear solution status: time= 8.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.336789e+00 9.700802e-07 0.000000e+00
energy 4.049867e+00 7.478068e-04 4.049867e-02
displacement 2.379902e+02 2.379902e+02 2.379902e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 8.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.336789e+00 3.452215e-15 0.000000e+00
energy 4.049867e+00 2.032078e-10 4.049867e-02
displacement 2.379902e+02 2.463205e-04 2.376544e-04
Reforming stiffness matrix: reformation #3
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
3
Nonlinear solution status: time= 8.5
stiffness updates = 0
right hand side evaluations = 4
stiffness matrix reformations = 3
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.336789e+00 1.276527e-28 0.000000e+00
energy 4.049867e+00 4.955569e-22 4.049867e-02
displacement 2.379902e+02 5.472900e-12 2.376543e-04
convergence summary
number of iterations : 3
number of reformations : 3
------- converged at time : 8.5
Data Record #1
===========================================================================
Step = 17
Time = 8.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 17
Time = 8.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 17
Time = 8.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 17
Time = 8.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 17
Time = 8.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 17
Time = 8.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(85%) tempModel.feb - FEBio 4.1.0
===== beginning time step 18 : 9 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
1
Nonlinear solution status: time= 9
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.364524e+00 2.302114e-07 0.000000e+00
energy 4.088667e+00 3.512295e-04 4.088667e-02
displacement 2.264132e+02 2.264132e+02 2.264132e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 9
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.364524e+00 1.981751e-16 0.000000e+00
energy 4.088667e+00 2.389307e-11 4.088667e-02
displacement 2.264132e+02 5.836558e-05 2.262581e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 9
Data Record #1
===========================================================================
Step = 18
Time = 9
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 18
Time = 9
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 18
Time = 9
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 18
Time = 9
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 18
Time = 9
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 18
Time = 9
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(90%) tempModel.feb - FEBio 4.1.0
===== beginning time step 19 : 9.5 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
1
Nonlinear solution status: time= 9.5
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.384549e+00 5.649134e-08 0.000000e+00
energy 4.118254e+00 1.695633e-04 4.118254e-02
displacement 2.189240e+02 2.189240e+02 2.189240e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 9.5
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.384549e+00 1.209263e-17 0.000000e+00
energy 4.118254e+00 2.938834e-12 4.118254e-02
displacement 2.189240e+02 1.430543e-05 2.188500e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 9.5
Data Record #1
===========================================================================
Step = 19
Time = 9.5
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 19
Time = 9.5
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 19
Time = 9.5
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 19
Time = 9.5
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 19
Time = 9.5
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 19
Time = 9.5
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(95%) tempModel.feb - FEBio 4.1.0
===== beginning time step 20 : 10 =====
Reforming stiffness matrix: reformation #1
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
1
Nonlinear solution status: time= 10
stiffness updates = 0
right hand side evaluations = 2
stiffness matrix reformations = 1
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.398983e+00 1.418219e-08 0.000000e+00
energy 4.140299e+00 8.341844e-05 4.140299e-02
displacement 2.139280e+02 2.139280e+02 2.139280e-04
Reforming stiffness matrix: reformation #2
===== reforming stiffness matrix:
Nr of equations ........................... : 558
Nr of nonzeroes in stiffness matrix ....... : 26992
2
Nonlinear solution status: time= 10
stiffness updates = 0
right hand side evaluations = 3
stiffness matrix reformations = 2
step from line search = 1.000000
convergence norms : INITIAL CURRENT REQUIRED
residual 1.398983e+00 7.692940e-19 0.000000e+00
energy 4.140299e+00 3.727499e-13 4.140299e-02
displacement 2.139280e+02 3.588143e-06 2.138919e-04
convergence summary
number of iterations : 2
number of reformations : 2
------- converged at time : 10
Data Record #1
===========================================================================
Step = 20
Time = 10
Data = ux;uy;uz
File = /home/kevin/GIBBON/data/temp/tempModel_disp_out.txt
Data Record #2
===========================================================================
Step = 20
Time = 10
Data = Rx;Ry;Rz
File = /home/kevin/GIBBON/data/temp/tempModel_force_out.txt
Data Record #3
===========================================================================
Step = 20
Time = 10
Data = sz
File = /home/kevin/GIBBON/data/temp/tempModel_stress_out.txt
Data Record #4
===========================================================================
Step = 20
Time = 10
Data = Uz
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_out.txt
Data Record #5
===========================================================================
Step = 20
Time = 10
Data = s1;s2;s3
File = /home/kevin/GIBBON/data/temp/tempModel_stress_prin_out.txt
Data Record #6
===========================================================================
Step = 20
Time = 10
Data = U1;U2;U3
File = /home/kevin/GIBBON/data/temp/tempModel_stretch_prin_out.txt
]0;(100%) tempModel.feb - FEBio 4.1.0
N O N L I N E A R I T E R A T I O N I N F O R M A T I O N
Number of time steps completed .................... : 20
Total number of equilibrium iterations ............ : 54
Average number of equilibrium iterations .......... : 2.7
Total number of right hand evaluations ............ : 74
Total number of stiffness reformations ............ : 54
L I N E A R S O L V E R S T A T S
Total calls to linear solver ........ : 54
Avg iterations per solve ............ : 1
Time in linear solver: 0:00:00
Elapsed time : 0:00:00
N O R M A L T E R M I N A T I O N
]0;(100%) tempModel.feb - FEBio 4.1.0 * Log file found. 04-May-2023 17:59:22
# Parsing log file... 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 0.5 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 1 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 1.5 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 2 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 2.5 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 3 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 3.5 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 4 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 4.5 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 5 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 5.5 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 6 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 6.5 04-May-2023 17:59:22
number of iterations : 6 04-May-2023 17:59:22
number of reformations : 6 04-May-2023 17:59:22
------- converged at time : 7 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 7.5 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 8 04-May-2023 17:59:22
number of iterations : 3 04-May-2023 17:59:22
number of reformations : 3 04-May-2023 17:59:22
------- converged at time : 8.5 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 9 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 9.5 04-May-2023 17:59:22
number of iterations : 2 04-May-2023 17:59:22
number of reformations : 2 04-May-2023 17:59:22
------- converged at time : 10 04-May-2023 17:59:22
Elapsed time : 0:00:00 04-May-2023 17:59:22
N O R M A L T E R M I N A T I O N
# Done 04-May-2023 17:59:22
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Import FEBio results
if runFlag==1 %i.e. a succesful run
Importing nodal displacements from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_disp),0,1);
%Access data
N_disp_mat=dataStruct.data; %Displacement
timeVec=dataStruct.time; %Time
%Create deformed coordinate set
V_DEF=N_disp_mat+repmat(V,[1 1 size(N_disp_mat,3)]);
Plotting the simulated results using anim8 to visualize and animate deformations
DN_magnitude=sqrt(sum(N_disp_mat(:,:,end).^2,2)); %Current displacement magnitude % Create basic view and store graphics handle to initiate animation hf=cFigure; %Open figure gtitle([febioFebFileNamePart,': Press play to animate']); title('Displacement magnitude [mm]','Interpreter','Latex') hp=gpatch(Fb,V_DEF(:,:,end),DN_magnitude,'k',1,2); %Add graphics object to animate hp.Marker='.'; hp.MarkerSize=markerSize2; hp.FaceColor='interp'; gpatch(Fb,V,0.5*ones(1,3),'none',0.25); %A static graphics object axisGeom(gca,fontSize); colormap(cMap); colorbar; caxis([0 max(DN_magnitude)]); caxis manual; axis(axisLim(V_DEF)); %Set axis limits statically view(140,30); camlight headlight; % Set up animation features animStruct.Time=timeVec; %The time vector for qt=1:1:size(N_disp_mat,3) %Loop over time increments DN_magnitude=sqrt(sum(N_disp_mat(:,:,qt).^2,2)); %Current displacement magnitude %Set entries in animation structure animStruct.Handles{qt}=[hp hp]; %Handles of objects to animate animStruct.Props{qt}={'Vertices','CData'}; %Properties of objects to animate animStruct.Set{qt}={V_DEF(:,:,qt),DN_magnitude}; %Property values for to set in order to animate end anim8(hf,animStruct); %Initiate animation feature drawnow;
Importing element stress from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_stress),0,1);
%Access data
E_stress_mat=dataStruct.data;
Importing element stretch from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_stretch),0,1);
%Access data
E_stretch_mat=dataStruct.data;
Plotting the simulated results using anim8 to visualize and animate deformations
[CV]=faceToVertexMeasure(E,V,E_stress_mat(:,:,end));
% Create basic view and store graphics handle to initiate animation
hf=cFigure; %Open figure /usr/local/MATLAB/R2020a/bin/glnxa64/jcef_helper: symbol lookup error: /lib/x86_64-linux-gnu/libpango-1.0.so.0: undefined symbol: g_ptr_array_copy
gtitle([febioFebFileNamePart,': Press play to animate']);
title('$\sigma_{zz}$ [MPa]','Interpreter','Latex')
hp=gpatch(Fb,V_DEF(:,:,end),CV,'k',1,2); %Add graphics object to animate
hp.Marker='.';
hp.MarkerSize=markerSize2;
hp.FaceColor='interp';
gpatch(Fb,V,0.5*ones(1,3),'none',0.25); %A static graphics object
axisGeom(gca,fontSize);
colormap(cMap); colorbar;
caxis([min(E_stress_mat(:)) max(E_stress_mat(:))]);
axis(axisLim(V_DEF)); %Set axis limits statically
view(140,30);
camlight headlight;
% Set up animation features
animStruct.Time=timeVec; %The time vector
for qt=1:1:size(N_disp_mat,3) %Loop over time increments
[CV]=faceToVertexMeasure(E,V,E_stress_mat(:,:,qt));
%Set entries in animation structure
animStruct.Handles{qt}=[hp hp]; %Handles of objects to animate
animStruct.Props{qt}={'Vertices','CData'}; %Properties of objects to animate
animStruct.Set{qt}={V_DEF(:,:,qt),CV}; %Property values for to set in order to animate
end
anim8(hf,animStruct); %Initiate animation feature
drawnow;
Visualize stretch-stress curve
stretch_sim=squeeze(mean(E_stretch_mat,1)); % Stretch U_z stress_cauchy_sim=squeeze(mean(E_stress_mat,1)); %Cauchy stress sigma_z cFigure; hold on; title('Uniaxial stress-stretch curve','FontSize',fontSize); xlabel('$\lambda$ [.]','FontSize',fontSize,'Interpreter','Latex'); ylabel('$\sigma_{zz}$ [MPa]','FontSize',fontSize,'Interpreter','Latex'); plot(stretch_sim(:),stress_cauchy_sim(:),'r-','lineWidth',lineWidth); view(2); axis tight; grid on; axis square; box on; set(gca,'FontSize',fontSize); drawnow;
Importing element principal stresses from a log file
dataStruct=importFEBio_logfile(fullfile(savePath,febioLogFileName_stress_prin),0,1);
%Access data
E_stress_prin_mat=dataStruct.data;
%Compute pressure
P = squeeze(-1/3*mean(sum(E_stress_prin_mat,2),1));
Visualize pressure-stretch curve
cFigure; hold on; title('Pressure-stretch curve','FontSize',fontSize); xlabel('$\lambda$ [.]','FontSize',fontSize,'Interpreter','Latex'); ylabel('$p$ [MPa]','FontSize',fontSize,'Interpreter','Latex'); plot(stretch_sim(:),P(:),'r-','lineWidth',lineWidth); view(2); axis tight; grid on; axis square; box on; set(gca,'FontSize',fontSize); drawnow;
Importing nodal forces from a log file
[dataStruct]=importFEBio_logfile(fullfile(savePath,febioLogFileName_force),0,1); %Nodal forces %Access data timeVec=dataStruct.time; f_sum_x=squeeze(sum(dataStruct.data(bcPrescribeList,1,:),1)); f_sum_y=squeeze(sum(dataStruct.data(bcPrescribeList,2,:),1)); f_sum_z=squeeze(sum(dataStruct.data(bcPrescribeList,3,:),1));
Visualize force data
displacementApplied=timeVec.*displacementMagnitude;
cFigure; hold on;
title('Force-displacement curve','FontSize',fontSize);
xlabel('$u$ [mm]','Interpreter','Latex');
ylabel('$F_z$ [N]','Interpreter','Latex');
hp=plot(displacementApplied(:),f_sum_z(:),'b-','LineWidth',3);
grid on; box on; axis square; axis tight;
set(gca,'FontSize',fontSize);
drawnow;
end
GIBBON www.gibboncode.org
Kevin Mattheus Moerman, [email protected]
GIBBON footer text
License: https://github.com/gibbonCode/GIBBON/blob/master/LICENSE
GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for image segmentation, image-based modeling, meshing, and finite element analysis.
Copyright (C) 2006-2023 Kevin Mattheus Moerman and the GIBBON contributors
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.